COLORADO-3D is a www-tool that greatly facilitates the
visual analysis of various features in three-dimensional
protein structures, directly at the level of the protein
structure, with the aid of commonly used viewers such as
RASMOL or
SWISSPDBVIEWER.
Among the features most important for the structural biologist
that our server allows to visualize in color are potential
errors in protein structure (detected by ANOLEA, PROSA, PROVE,VERIFY3D),
regions buried in the protein core and inaccessible to the solvent,
and regions of high or low sequence conservation
(e.g. detected by RATE4SITE).
In particular COLORADO3D may serve to visualize the results
of assessment of the protein structure's quality at various
stages of the model building and refinement (both in the case
of experinemtal structure determination and homology modeling).
Just Log in and Enjoy Your Coloured Proteins! :-)
Two alternative homology models of protein 1h7m colored
according to the results of structure evaluation with the
VERIFY3D method